species:   Opsin
pid:       PID1907
parent:    n_os_milR_30
paralog:   
locus:     JAAVMX010000008.1:1864250-1864356
matures:   ['UACCCGUUGGGAACUAAGUGUCA', 'ACACUUAUGUUCCCAACGGGUAUC']
srr:       SRR12952905
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952905.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952905.cram JAAVMX010000008.1:1864250-1864356

0 out of bounds
2 alignments
1 proper strand
1 stranded perfect matches

          ***********************                                        ************************          
UGCUGCCUACUACCCGUUGGGAACUAAGUGUCACGUAUACGAGUUAUUCCCAACGGGUUAAGUGUCUUCUUCAAGACACUUAUGUUCCCAACGGGUAUCCAAUUGCA
(((.......((((((((((((((((((((((.........(.(((.(((....))).))).)...........)))))))).)))))))))))))).......)))
----------UACCCGUUGGGAACUAAGUGUCA-------------------------------------------------------------------------- l=23 a=0 c
---------------------------------------------------------------------------ACACUUAUGUUCCCAACGGGUAUC-------- l=24 a=0 c*
------------CCCGUUGGGAACUAAGUGUCA-------------------------------------------------------------------------- l=21 a=1 ma
---------------------------------------------------------------------------ACACUUAUGUUCCCAACGGGUA---------- l=22 a=0 ma*

------------CCCGUUGGGAACUAAGUGUCA-------------------------------------------------------------------------- l=21 a=1 (ma)

mb-01011
ax-1011011
ku-01
ss-100110111100
fn-001
